GranularityOpts #ДЄllowable granularity options for nodes in the graph.ДЄlias of Literal. Other options are 'CB' (beta-carbon), 'atom' for all-atom graphs, and 'centroid' for nodes positioned as residue centroids. Granularity ( str) вЂ“ Specifies the node types of the graph, defaults to 'CA' for alpha-carbons as nodes.

Pdb_dir ( pathlib.Path) вЂ“ Path to PDB files to be used to compute intramolecular interactions. Get_contacts_path ( pathlib.Path) вЂ“ Path to GetContacts installationД¬ontacts_dir ( pathlib.Path) вЂ“ Path to store output of GetContacts More information about GetContacts can be found at Parameters

GetContacts is an optional dependency from which intramolecular interactions can be computed and used as edges in the graph. GetContactsConfig ( *, get_contacts_path : pathlib.Path = PosixPath('/Users/arianjamasb/github/getcontacts'), contacts_dir : pathlib.Path = PosixPath('/Users/arianjamasb/graphein/examples/contacts'), pdb_dir : pathlib.Path = PosixPath('/Users/arianjamasb/graphein/examples/pdbs'), granularity : str = 'CA' ) #Д¬onfig object for parameters relating to running GetContacts. Base Config object for use with Protein Graph Construction.

Pymol tutorial measure bond distance